Hi there,
For the first issue, you must increase window tip in on the window that mates with the weatherstrip. This is done, by loosening the 10mm retaining nut, located at the bottom of the door.
This is under a black rubber plug, and once removed, you can access the 10mm nut.
I would suggest that you have a person lean in at the top of the door glass slightly, while you at the bottom loosen the nut. The regulator will move, and then retorque to 110 in lbs.
Please let us know how you make out.
As for the other complaint, from 98txred, please understand, that under normal service, you should not have to re weather strip the entire car.
I would suggest that you adjust your roof to windshield striker down 1/32 of an inch. This should increase tension on the weatherstrip, and stop the leak.
If you need further instructions, please dont hesitate to ask.
Besttoyouboth, c4c5