i'd guess the mounting bolts/pattern will be the big issue. These trans come from 2 different blocks. I'm sure it CAN be done, but what kind of adaptors are required, or swapping internal mating parts.. bellhousings...
Drive shaft is nothing to fear. Measure and make a new one. balance and install. You even get the option of making one with bigger joints...The CENTER BEAM might be an issue. Not sure if its the same length on all models/trans types. Thats gonna matter.
Linkage...may need to use the entire linkage that came on the trans, some mounts welded on the chassis, but thats just a fabrication challenge, not a deal breaker at all. The linkage WILL be in about the same place, length of links because the c-4 chassis stayed the same, just eng& trans changed.
Once bolted up, the rest is just some creative engineering.
I'd enjoy seeing how that 6 performed behind the stump puller.