If you are noticing a voltage drop WHEN the car is running, its not the battery, The monitored voltage when the car is running is for the charging system and not the battery. You can check the battery voltage by turning the ignition switch to ON, but with the engine NOT started. I have not noticed this voltage drop on my 98, but on other vehicles I've had, as the window motor was 'dying', it would draw more current (hence a drop in Volts). The problem MAY be in a loose ground, dirty motor windings, dirt in the window track, etc that may cause a strain on the electric motor.
Does the window move slower than you're used to seeing? As for the brakes, you got me there. Do you have any codes on the DIC? If so, I have a 98 repair manual, and would be willing to check it out for you, but at best, it will give you only a very rough approximation as to the problem.
HTH,
Joe