been thru this, as a hot start problem
jimmers said:
All the lights on my car are working great.
So the battery is not the problem, most likely. Even new batteries can hold a "surface charge" which may not start the car, consistantly. The battery tests okay, except under a proper load, say, that done with a VAT test; a simple, quick check done at any decent shop. I suspect this is not your problem; yet.
jimmers said:
When i try to start it, it does give me a clicking sound.
This eliminates the electrical control; the lockouts for neutral and the clutch. The starter is not getting enough current flow for some reason.
jimmers said:
I took the ground wires off at one point on the car then put them back on, screwing them down tight. Ever since that the car has been fine for a few days.
When you pulled the wires, did you thoroughly clean them? I like to wire brush them, then carefully use a chemical brush with a baking soda/water solution, then rinse and dry. DO NOT get this alkaline solution into the battery! I follow that cleaning with a light coating of Vaseline to slow moisture/corrosion accumulation. This should be done at each heavy ground to metal (Frame) connection. Also, AutoZone and others carry grounding straps, which are about 5 bucks. It doubt the car can have too many, and adding one from a starter attach bolt to the frame may help. I don't know if you live in a corrosive area, but those wires can go bad, too. I'd do the cleaning/protection, then move to another possibility.
jimmers said:
How exactly do you jumper the clutch switch?
A wire between the two terminals, attached to a switch under the dash, tripped by the clutch pedal, but see above.
jimmers said:
where is this neutral switch exactly?
I cannot find one for the 6-speed on a '90. There are three elecrical connections on the tranny: one near the rear is for the speed sensor; the forward one is for the backup lights, and the central one is the dreaded CAGS. The automatic has a neutral switch in the console area.
jimmers said:
Im really stumped on this one!!!

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Just keep patient. Electrical issues can be complex, but they just take a process of elimination to solve.
The above is good to do as long-interval routine maintenance, especially in wetter, more corrosive climates (salt?).
While that may solve your problem, you might have a component draining the system, which will get you into the fuse-pulling routine that melena52 spoke of. Ensure your ammeter has sufficient capability. With a seemingly slow drain, it is likely well under 1 amp.
If your problems started right after the new starter, that is a clue of where to look. Was the solenoid changed? I have taken many apart and simply cleaned the contact disk and the large contacts. Also, I have turned that disk over to have a virgin surface for contact. A thrifty guy am I

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Were all the starter wires properly reattached; not shorting to a ground?
My best
guess is that you either have a component draining power or a bad battery. There are other threads on this topic, and I am sure you looked at them, and at your car to ensure things shut down when you leave it.