I must agree with your initial estimation of a Head Gasket, but the low end noise is a dead ringer that the extra liquid in the crank case may have caused you to spin a bearing. See, anitfreeze doesn't have any lubricating qualities, and probably cleaned out ALL the oil and caused it to seize to the crank. Hence the deep "ka thunka" noise. Draining out more than you put in the crank case is never good.
Now you're in for some real work. Read your manuals! Get all the needed equipment to haul the engine out. I'll take bets you are on your way to a lower end rebuild, as well as new Head Gaskets. If you were ever thinking of making any performance improvements, now is the time to invest in them.
If you don't have one, get a digital camera, so you can document where every thing came from, and refer to it as you go to reassemble the block and head.
Lots of Luck, Taegdh