Well last night I decided I would change the cap, and rotor. Boy that was an awful experience. I put the new stuff on and put it all back together to make sure it ran right before I took the plugs off. Well It didn't you could clearly tell it wasn't hitting on all 8. So I took the stuff off and reassembled it with the same result. Then I took it off once again and put the old cap and rotor on, and it ran even worse. Thankfully it ran good enough to move it into the garage so my brother could look at it this morning.
So today my brother looked at it and we checked the routing of the wires and they were all correct, so we figured it was probably one of the connectors in the wires. We changed the wires with Accell wires, and ACdelco rapidfire plugs (which was an ordeal buying them at Autozone...) So we got it back together and it ran like it should. Next we changed the fuel filter out with a new one. I am glad I did this since the one on the car was the original.
Overall the car seems to pull a little harder, it is probably just my imagination but oh well :L Thanks for all the help guys.
It is still leaking antifreeze like a mofo from around the T-stat housing. So Monday it goes back to the shop, and If he tries to charge me for more then the gasket I will just do it myself I guess.