well, here is the deal... you are lucky in having a '93 in one way, you can easily take the cats off, if you want to... I don't want to get into the debate of environmental issues here, but a car that only gets used a few thousand miles per year isn't going to kill off the world if it doesn't have cats... I would put in a 'test pipe' where the cats are, and keep them if you want to put them on later... Headers and exhaust in your setup will probably reduce horsepower because it will flow too much... I have seen dynomax numbers on stock engines and they are good for some horsepower... One of the vette magazines did an article on most of the exhaust systems a while back (vette or corvette fever) On yours, it should be good for more than just a few... They are a bit more 'throaty' than the stock mufflers, but no one would be suspicious... I don't even think your old lady would notice (the key is not to mention the swap, and make sure you are getting the dynomax that are supposed to be quiet)... Flowmaster, in my opinion, do not work well... they do the opposite of what a muffler should do... The tend to really increase sound inside the car, while the sound ouside the car is louder, it doesn't seem loud enough to warrant the huge interior increase... (this is due to a setup that bounces the sound back and forth, then it goes up and down, up into the cockpit of the car)
Another option (if money is less of an object) are the power effects exhaust... closed they run like stock, open they are loud and run like straight pipe... I honestly think they are ugly as can be, but I am sure there is a way to put an LT1 tip on those as well (the company may even do it for you)
Option 3--- the borla system for camaros and firebirds has removable plates that have holes in them... the plates make the exhaust go all the way through the muffler, or straight out with no muffler at all... you could put a short Y before each muffler, and cap it off with a metal plate... when you want to have it loud, take off the cap, quiet for the wife, put the cap back on... the benefit is the stock mufflers are so big, you should be able to hide it behind everything so you can even see it from the back of the car, a local muffler shop shouldn't charge more than 150 to do something like that
--MSD = waste of money... I have never seen a car perform better with one that is only mildly modified... They also tend to eat up spark plugs... I am talking 15k miles on bosch plat. plugs... If you get up to 400 HP it may be worth it. Until then, the stock system works just fine. put your money towards exhaust...
--Wires may help, but don't expect anything.... the stock wires aint bad either... the whole stock ignition system is pretty good...
--at 50k miles, and a 10 year old car, I would go for new plugs... Here is the deal... The plugs that GM sells are something like 8 bucks each... well, they work much better than bosch plat. (2 bucks? each)... something about the temperature range makes them so much better it is unreal... They will also probably last you until you rebuild the engine. I like that because they are so hard to get to on 92-96 vettes.
Well, there goes another long post

exhaust is definitely holding you back right now though, I think so much so that the increased rocker isn't really doing much for you, as well as some of the intake work.
Also, since you have a hypertech chip, which should be a stage II chip, you may try going back to stock and seeing how the car runs... Hypertech is famous for advancing the timing too much... If your engine is slightly better than stock, the chip could take you over the edge on timing, effectively reducing HP... On the OBD computers, I have seen many cars run better in stage I mode than stage II, because the timing isn't advanced as much... superchips is much better and will custom make you a chip for a reasonable price... This will take into consideration the icreased rocker height, increased air intake, and possibly exhaust