Update - Sad story
Alright, here is the update. All was going well, I had the top cover and back shields on and thought I would crank it over just to make sure all was still well. As soon as I cranked it over, smoke started appearing from under the shielding :ugh . I shut the car off and now it is dead, dead as a door nail. Nothing works not even the interior light. :cry
Here is what I think happened. A small red wire leading to the coil had a bare spot where the wire had been joined together and that shorted out against the shielding. This in turn fried the resistor (the ceramic piece attached to the firewall). That resistor (not sure if that is what it is called) was extremely hot and smoking big time. So, I tested it and current no longer runs through it. So I am going to replace it.
Lesson learned: I should have taped the bare wire :duh
At a time like this it is hard to focus back on the job at hand, but I can not see how the side chrome pieces bolt onto the exhaust manifold. :confused
Also, if I bypass the resistor shouldn't my interior light come on? (I just wanted to see some sign of life.