Although the position of the wheels may have made it more difficult to install the half-shaft (how difficult was it?), I doubt the position of the wheels would make any difference, once the car has been driven at least a bit after the install (to straighten the tires in the vertical plane). Easy to check, put the rear up on ramps and remove/re-install the outboard flange bolts.
Questions: How do you know it's the half-shaft that "binds up and makes a noise"? Were the U-joints moving freely in all directions before you installed the half-shaft in the car? Were you able to tighten/seat the flange bolts at the spindle and U-bolt nuts at the differential?
I'm surmising that you may have had a binding U-joint after you installed the U-joints, or that you lost/dropped a needle bearing in one of the caps during that process; when manipulated by hand, the U-joints should flop around quite freely without any serious stiffness/binding at any point.... if you're not
certain they did, remove the half-shaft and check that.