Do your research.
Some options are:
ROD 6 speed: approx $3200 for tranny with shifter, fairly easy and a common swap
T56 6 speed: can be found in junkyards, somewhat difficult due to size and a rare swap
Tremec 3550/TKO 5 speed: approx $1600 - $1800 for tranny only, fairly easy and common
T5 5 speed: can be found in junkyards for real cheap, pretty weak, not commonly swapped
First, decide if you really want the 6-speed over the 5-speed. Some 6 speeds will have 2 overdrives (T-56, for example), others only 1 (ROD). All of the 5 speeds I've seen have 1 overdrive. The 6 speeds are almost always signifigantly more expensive than the 5 speeds.
IMHO, 1 OD is plenty. The ROD 6 will give you 5 non-OD gears while just about any other OD tranny will only have 4. This may be important depending on how the car is used.
Other points to consider would be:
ease of installation (ROD6 and Tremec 3550/TKO are probably the easiest)
need to convert to hyd clutch ( ROD 6 and Tremec 3550/TKO don't)
internal vs. external shift linkages (ROD 6=external, 3550/TKO=internal)
tranny gear ratios (especially 1'st) suited for your rear gear ratio
strength of tranny
I don't have an OD tranny, but at one point I was pretty close to going that route. I would have opted for the Tremec 3550. The only thing I didn't like about it was the huge gear ratio differences between 1'st and 2'nd gears.