TR,
See, you don't actually do any damage, or significant damage to the stock carpet, etc. You leave it all there and build the triangulated box to rest right on top. In maybe each corner of the box you run a drywall screw through the box, past the stock carpet and anchor it into the fiberglass body. It does not take much after it is already a snug fit to really hold that baby in place. Plus you get more bass reaction when it is firmly mounted in the car.
As far as wiring goes, the amp needs a direct feed from the battery. Your amp will be behind the passenger seat, in the rear cubby, or on the floor under the passenger seat. It requires a direct power, ground, then it takes a signal wire from the stereo to acitivate the relay to kick it on. It will then have two RCA jack inputs from the stereo and two sub feed set of wires coming out.
It would not be suggested by a real audiofile, but.....you can tuck it away with little to no problems. It is best to have the amp out in the open maybe in the rear hatch area, etc so plenty of air can get to it. I have a 200 watt MTX thunder amp in my 90 in the rear cubby, and the 500 watt RF amp under the passenger seat of my 69. I have had the 500 watt amp on the 69 pumping at 75% or so for three hours straight with zero defects.
Yes, you will be stringing wires throught the console, then to the individual parts. A good install requires a creative person (it does not mean you have to be a mechanic or a stereo expert---just creative and not afraid to explore possibilities). You will have to lift the carpet up here and there to run wires, and poke some small holes in it when needed. For example, the two sets of speaker wires going to the sub box will have to go under the carpet, then pop out right at the amp box out of sight.
The stock manual will not help you here. Creativity, the install manual for the amps and stereo/speakers, and ask plenty of questions.
My 90 Vette is very simple. It has a am/fm cassette in the dash (who wants to steal that?)---sony, that controls the 10 disc changer hidden in the rear cubby next to the AMP. Then I have a simple 10" sub box and 10" MTX sub with POLK audio surround speakers driven off the power of the head unit. It rocks hard.
I would prefer a nicer looking install on the sub, but we are only talking about a C4 here, so I am not sweating it all that bad.
On the 69 we got freaky particular about building a box that would house subs, fit in the rear, and still let the top go up and down. There are trade offs for everything. I could have even more explosive bass with a bigger "tuned" box, but there was no room for that.
Worse case scenario, TR,....you put in a good head unit, good surround speakers, then buy an amplified 8" base tube that you can pull in and out of the rear. Cover it with a towell or better yet..(I love this one), find a gym bag that you can cut the bottom out of, then slip it over the sub bass tube, and zipper the top up. If anybody looks through the back window of the car, they just see a musty old gym back and keep on walking. Meanwhile, you can pump some nasty strong backbone shattering bass out of that bad boy!!!!!!!!!!!!